cis

Cis-eQTLs across different cancer types

In cis-eQTL, we identified 87,833 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.
This page displays cancer type, SNP ID: Reference id from dbSNP, SNP Position: The position of SNP including chromosme, Alleles: SNP alleles, Gene Position : Strand: Gene genomic position including chromosome, gene region and strand, r: The correlation coefficient, Beta: Effect size of SNP on gene expression (calculated by linear regression using a computationally efficient eQTL analysis called Matrix eQTL), P-value: P-value calculated by Matrix eQTL, Display: Provide diagram of boxplot to display the association between SNP genotypes and gene expression.


e.g., hsa-miR-3130-5p or MIMAT0014995

e.g., rs1474309



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eQTL plot ×

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